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Models of the proteins involved in Ni(II) ions import and export in Helicobacter pylori

Model of the SnrR-OP(SodF) complex

PacDOCK files for comparison with similar web servers

alpha4beta1 human integrin model structure

Functional contacts for activation of urease from Helicobacter pylori: an integrated approach using evolutionary couplings, in cell enzymatic assays, and computational docking

Urease flap movement

Morphing between the open (2UBP) and closed (3UBP) conformation of the Sporosarcina pasteurii urease flexible flap. The protein backbone is shown as a light blue ribbon, while the flap is in dark cyan. Lys220, Cys322 and His323 are shown as sticks. The Ni(II) ions are shown as green spheres. The morphing in the bottom animation is rotated by 180° around the vertical axis vs the top animation. Animations made with UCSF Chimera.

Video (same point of view of the picture)

Video (observation point rotated by 180° degrees with respect of that in the picture)